My husband uses both OSX and Linux so I asked him if he had any advise for you. This is what he said...
I'd create a full bootable backup so you can do a 100% restore if things go haywire. I like SuperDuper for that: http://www.shirt-pocket.com/SuperDup...scription.html - Of course, then it's not readable by Linux. Otherwise I'd use a FAT32-formatted drive and backup the entire /Users directory as others have said.
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