So is she in here crate during the day while you are at work AND at night while you are sleeping? That's a lot of crate time...
When I first brought Duncan home, he was in his crate during the day and slept in my bedroom with the door closed at night. Is that a possibility for you? Do you want her to sleep in her crate as an adult also? Once you set up a routine for her, she should settle down, be it in her crate day and night or just day. It's hard when they cry but Lute is right, taking her out for anything more than a pee break during the night will just encourage her to cry more to get attention. Also, when you do take her out for a pee, don't speak to her. No playing or cuddling! No matter how cute she is or how much she tries to get your attention! She'll have you up all night then!!